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    LOC4325600 receptor-like protein kinase FERONIA [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325600, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325600
    Gene description
    receptor-like protein kinase FERONIA
    Locus tag
    OSNPB_010769700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YK1; P0665A11.8
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    Genomic context

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    See LOC4325600 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33067494..33070681)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32461784..32465066)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like Neighboring gene wax ester synthase/diacylglycerol acyltransferase 11 Neighboring gene wax ester synthase/diacylglycerol acyltransferase 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Rice Receptor-Like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization during Reproductive Development. Pu CX, et al. Plant Cell, 2017 Jan. PMID 28082384, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DRUS1 (LOC4332743; FLR1; LOC_Os03g21540; AK099791) and DRUS2 (LOC4325600; FLR2; LOC_Os01g56330; AK101775) are typical receptor-like kinases (RLKs) but have distinct biological functions in rice reproduction.
      Title: The Rice Receptor-Like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization during Reproductive Development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane receptor protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like protein kinase FERONIA
    Names
    B1143G03.32
    Os01g0769700
    putative protein kinase
    serine/threonine protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33067494..33070681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766640.3 → XP_015622126.1  receptor-like protein kinase FERONIA

      UniProtKB/TrEMBL
      A2WVH5, B9ET78, Q5ZAP9, Q94EF4
      Conserved Domains (2) summary
      cd14066
      Location:549 → 815
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam12819
      Location:52 → 422
      Malectin_like; Carbohydrate-binding protein of the ER
    Nucleotide Protein
    Heading Accession and Version

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