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    LOC4324936 probable ion channel POLLUX [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324936, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324936
    Gene description
    probable ion channel POLLUX
    Locus tag
    OSNPB_010870100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPOLLUX; P0039A07.9
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.3), roots after flowering (RPKM 10.2) and 6 other tissues See more
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    Genomic context

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    See LOC4324936 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38343476..38349271, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37714875..37720660, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937602 Neighboring gene photosystem II 22 kDa protein 1, chloroplastic Neighboring gene serine/threonine-protein kinase SAPK4-like Neighboring gene uncharacterized LOC107276856 Neighboring gene DNA repair protein XRCC2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ion channel POLLUX
    Names
    LOC_Os01g64980
    P0039A07.9-1
    P0039A07.9-2
    P0677H08.41
    P0677H08.41-1
    P0677H08.41-2
    Probable ion channel DMI1
    putative DMI1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396863.1 → NP_001383792.1  probable ion channel POLLUX

      Status: VALIDATED

      Source sequence(s)
      AK067564, AK072312
      UniProtKB/Swiss-Prot
      Q0JHD3, Q5N940, Q5N941
      UniProtKB/TrEMBL
      A2WXE1, A3A006
      Conserved Domains (1) summary
      pfam06241
      Location:553 → 656
      Castor_Poll_mid; Castor and Pollux, part of voltage-gated ion channel

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38343476..38349271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N941.1 GenPept UniProtKB/Swiss-Prot:Q5N941

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