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    LOC4325613 CBL-interacting protein kinase 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325613, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4325613
    Gene description
    CBL-interacting protein kinase 12-like
    Locus tag
    OSNPB_010759400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPK7; CIPK12; OsCIPK12; P0460E08.9
    Expression
    Broad expression in leaves before flowering (RPKM 14.8), roots after flowering (RPKM 12.8) and 6 other tissues See more
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    Genomic context

    See LOC4325613 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32548303..32553354, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31943450..31948636, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tubby-like F-box protein 2 Neighboring gene CBL-interacting protein kinase 30-like Neighboring gene uncharacterized LOC9270029 Neighboring gene nucleobase-ascorbate transporter 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    cBL-interacting protein kinase 12
    Names
    B1131G08.38
    CBL-interacting protein kinase 12
    LOC_Os01g55450
    NP_001388395.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401466.1NP_001388395.1  cBL-interacting protein kinase 12

      Status: VALIDATED

      Source sequence(s)
      AK101442
      UniProtKB/Swiss-Prot
      Q5JLS2, Q7F595, Q9SLZ5
      UniProtKB/TrEMBL
      A2ZY12, B3GM01

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32548303..32553354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)