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    LOC4325855 F-box/FBD/LRR-repeat protein At1g13570 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325855, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4325855
    Gene description
    F-box/FBD/LRR-repeat protein At1g13570
    Locus tag
    OSNPB_010553400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1110C07.8
    Expression
    Ubiquitous expression in flower buds (RPKM 8.1), leaves before flowering (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4325855 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (21375776..21380151)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (20805763..20810175)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357284 Neighboring gene uncharacterized LOC9269668 Neighboring gene uncharacterized LOC9269908 Neighboring gene uncharacterized LOC112939589

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/FBD/LRR-repeat protein At1g13570
    Names
    F-box domain-containing protein
    OSJNBa0066C06.35
    Os01g0553400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      21375776..21380151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768697.3 → XP_015624183.1  F-box/FBD/LRR-repeat protein At1g13570

      UniProtKB/TrEMBL
      A0A0N7KD54, Q0JLZ9, Q5JKM5, Q5JKT8
      Conserved Domains (3) summary
      sd00032
      Location:184 → 204
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:42 → 76
      F-box; F-box domain
      pfam08387
      Location:409 → 442
      FBD

    2. XM_015768689.3 → XP_015624175.1  F-box/FBD/LRR-repeat protein At1g13570

      UniProtKB/TrEMBL
      A0A0N7KD54, Q0JLZ9, Q5JKM5, Q5JKT8
      Conserved Domains (3) summary
      sd00032
      Location:184 → 204
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:42 → 76
      F-box; F-box domain
      pfam08387
      Location:409 → 442
      FBD
    Nucleotide Protein
    Heading Accession and Version

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