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    LOC4342449 protein YABBY 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342449, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342449
    Gene description
    protein YABBY 1-like
    Locus tag
    OSNPB_070160100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FIL1; YAB1; OsYAB1; OsYABBY1; OJ1714_H10.119-1
    Expression
    Biased expression in flowers (RPKM 164.2), flower buds (RPKM 107.2) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3279792..3289156)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3219928..3229235)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357393 Neighboring gene uncharacterized LOC136357392 Neighboring gene uncharacterized LOC136357286 Neighboring gene uncharacterized LOC136351056 Neighboring gene CST complex subunit TEN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1. Toriba T, et al. Mol Genet Genomics, 2007 May. PMID 17216490
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YABBY 1
    Names
    LOC_Os07g06620
    Protein FILAMENTOUS FLOWER 1
    putative MADS-box transcription factor CDM51

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403024.1 → NP_001389953.1  protein YABBY 1

      Status: VALIDATED

      Source sequence(s)
      C73137, CI149087, CI257104, CI720232
      UniProtKB/Swiss-Prot
      B7EH95, Q0D8H2, Q7XIM7, Q9ZSP1
      UniProtKB/TrEMBL
      B8B7F0, D3U2G4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3279792..3289156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791929.3 → XP_015647415.1  protein YABBY 1 isoform X1

      UniProtKB/TrEMBL
      B8B7F0
      Conserved Domains (1) summary
      pfam04690
      Location:5 → 155
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XIM7.1 GenPept UniProtKB/Swiss-Prot:Q7XIM7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials