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    LOC4324244 E3 ubiquitin-protein ligase At4g11680 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324244, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4324244
    Gene description
    E3 ubiquitin-protein ligase At4g11680
    Locus tag
    OSNPB_010703300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 18.7), flower buds (RPKM 5.5) and 1 other tissue See more
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    Genomic context

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    See LOC4324244 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29740838..29742917)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29152452..29154752)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene myb-related protein Hv33 Neighboring gene nuclear poly(A) polymerase 4 Neighboring gene farnesyl pyrophosphate synthase Neighboring gene AP-1 complex subunit mu-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase At4g11680
    Names
    Os01g0703300
    P0421H07.23-1
    RING zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29740838..29742917
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777469.3 → XP_015632955.1  E3 ubiquitin-protein ligase At4g11680

      UniProtKB/TrEMBL
      A0A8U0WP67, A2WU72, A2ZWZ5, Q8LR65
      Conserved Domains (1) summary
      cd16474
      Location:258 → 300
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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