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    LOC4342211 GTPase activating protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342211, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342211
    Gene description
    GTPase activating protein 1
    Locus tag
    OSNPB_070108400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1567_G09.101
    Expression
    Biased expression in flower buds (RPKM 169.2) and flowers (RPKM 41.4) See more
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    Genomic context

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    See LOC4342211 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (461627..463987, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (451740..454100, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357329 Neighboring gene protein DETOXIFICATION 18 Neighboring gene glutamate--glyoxylate aminotransferase 2 Neighboring gene xylanase inhibitor protein 2-like Neighboring gene protein C2-DOMAIN ABA-RELATED 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    GTPase activating protein 1
    Names
    Os07g0108400
    P0585H11.116
    zinc finger and C2 domain protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      461627..463987 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026725.2 → XP_025882510.1  GTPase activating protein 1

      UniProtKB/TrEMBL
      A0A0P0X235, A0A5S6RAW6, A3BFV0, Q0D942, Q7XIV3
      Conserved Domains (1) summary
      cl14603
      Location:5 → 148
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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