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    LOC4336407 transcription factor MYB4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336407, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336407
    Gene description
    transcription factor MYB4-like
    Locus tag
    OSNPB_040517100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    myb; LTR1; MYB4; OsMyb4; OsJ_15470
    Expression
    Biased expression in roots before flowering (RPKM 547.0) and flowers (RPKM 14.4) See more
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    Genomic context

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    See LOC4336407 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26345351..26347225, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25843038..25844907, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336405 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene uncharacterized LOC4336406 Neighboring gene protein root UVB sensitive 2, chloroplastic Neighboring gene inositol phosphorylceramide glucuronosyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The electronic Plant Gene Register. . Plant Physiol, 1997 Jun. PMID 9235602, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription factor MYB4
    Names
    LOC_Os04g43680
    OSJNBa0073E02.6
    Transcription factor RLTR1
    myb-related protein 4
    myb-related protein Myb4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402399.1 → NP_001389328.1  transcription factor MYB4

      Status: VALIDATED

      Source sequence(s)
      CI641003, Y11414
      UniProtKB/Swiss-Prot
      O04140, Q0JBQ5, Q7XBH4, Q7XKW3, Q8SA75
      UniProtKB/TrEMBL
      Q01J53

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26345351..26347225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XBH4.2 GenPept UniProtKB/Swiss-Prot:Q7XBH4

    Gene LinkOut

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