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    LOC4349610 probable WRKY transcription factor 70 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349610, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349610
    Gene description
    probable WRKY transcription factor 70
    Locus tag
    OSNPB_110116900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 21.8), leaves before flowering (RPKM 8.9) and 6 other tissues See more
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    Genomic context

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    See LOC4349610 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (803123..806868, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (759568..763344, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene vacuolar-sorting receptor 1 Neighboring gene probable WRKY transcription factor 70 Neighboring gene probable WRKY transcription factor 67 Neighboring gene uncharacterized LOC107279419 Neighboring gene WRKY DNA-binding transcription factor 70

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 70
    Names
    Os11g0116900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      803123..806868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760957.3 → XP_015616443.1  probable WRKY transcription factor 70 isoform X2

      UniProtKB/TrEMBL
      Q0IV30
      Conserved Domains (1) summary
      smart00774
      Location:41 → 102
      WRKY; DNA binding domain

    2. XM_015760956.3 → XP_015616442.1  probable WRKY transcription factor 70 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YN20, B8BIR2, B9G924, Q0IV30, Q2RBC3
      Conserved Domains (1) summary
      smart00774
      Location:43 → 104
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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