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    LOC4331897 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331897, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331897
    Gene description
    2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic
    Locus tag
    OSNPB_030190100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 23.8), roots after flowering (RPKM 12.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331897 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4708643..4711594, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4697239..4700189, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280359 Neighboring gene vegetative cell wall protein gp1 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene uncharacterized LOC4331899

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phylloquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic
    Names
    1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic
    Os03g0190100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4708643..4711594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772366.3 → XP_015627852.1  2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9F5L6, Q10QN3, Q8H7M8
      Conserved Domains (1) summary
      PLN02922
      Location:50 → 364
      PLN02922; prenyltransferase

    2. XM_015772365.3 → XP_015627851.1  2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q8H7M8
      Conserved Domains (1) summary
      PLN02922
      Location:50 → 369
      PLN02922; prenyltransferase
    Nucleotide Protein
    Heading Accession and Version

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