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    LOC4351319 non-specific lipid-transfer protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351319, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351319
    Gene description
    non-specific lipid-transfer protein 1
    Locus tag
    OSNPB_120115300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351319 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (769881..770831)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (746148..747106)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein 2B-like Neighboring gene non-specific lipid-transfer protein 1-like Neighboring gene uncharacterized LOC107279573 Neighboring gene probable non-specific lipid-transfer protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 1
    Names
    Os12g0115300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      769881..770831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763238.3 → XP_015618724.1  non-specific lipid-transfer protein 1

      UniProtKB/TrEMBL
      A0A8J8YB53, A2ZAT2, A2ZHF2, A3CEC3, Q0IQK8, Q2QYL0
      Conserved Domains (1) summary
      cd01960
      Location:28 → 115
      nsLTP1; nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and ...
    Nucleotide Protein
    Heading Accession and Version

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