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    LOC4350398 mitochondrial dicarboxylate/tricarboxylate transporter DTC [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350398, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350398
    Gene description
    mitochondrial dicarboxylate/tricarboxylate transporter DTC
    Locus tag
    OSNPB_110432400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350398 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (15795768..15799672)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (13941566..13945502)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 3 Neighboring gene serine carboxypeptidase-like 7 Neighboring gene uncharacterized LOC136354105 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 Neighboring gene uncharacterized LOC4350400

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial dicarboxylate/tricarboxylate transporter DTC
    Names
    Os11g0432400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      15795768..15799672
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759932.2 → XP_015615418.1  mitochondrial dicarboxylate/tricarboxylate transporter DTC

      UniProtKB/TrEMBL
      A0A0P0Y1K8, B8BKA3, Q0IT09, Q53PA7
      Conserved Domains (1) summary
      pfam00153
      Location:112 → 208
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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