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    LOC4327282 probable pectinesterase/pectinesterase inhibitor 41 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327282, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327282
    Gene description
    probable pectinesterase/pectinesterase inhibitor 41
    Locus tag
    OSNPB_010311800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 15.3) and flowers (RPKM 1.2) See more
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    Genomic context

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    See LOC4327282 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11757003..11759526, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11715244..11717799, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cytosolic sulfotransferase 5 Neighboring gene cell wall / vacuolar inhibitor of fructosidase 2 Neighboring gene pectinesterase Neighboring gene endoglucanase 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectinesterase/pectinesterase inhibitor 41
    Names
    B1011A07.12-1
    B1011A07.12-2
    Os01g0311800
    pectin methylesterase PME1-like protein
    putative pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      11757003..11759526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769978.3 → XP_015625464.1  probable pectinesterase/pectinesterase inhibitor 41

      UniProtKB/TrEMBL
      A0A0P0V234, A2WP19, A2ZSC3, Q8LQA0
      Conserved Domains (1) summary
      PLN02713
      Location:20 → 557
      PLN02713; Probable pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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