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    LOC4343618 brefeldin A-inhibited guanine nucleotide-exchange protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343618, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343618
    Gene description
    brefeldin A-inhibited guanine nucleotide-exchange protein 5
    Locus tag
    OSNPB_070564700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E08.119; OJ1112_E08.120; OJ1773_H01.101
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    Genomic context

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    See LOC4343618 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22864198..22875218, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22634757..22645874, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial Neighboring gene secretory carrier-associated membrane protein 1-like Neighboring gene uncharacterized LOC4343619 Neighboring gene small ribosomal subunit protein uS17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    brefeldin A-inhibited guanine nucleotide-exchange protein 5
    Names
    Os07g0564700
    Os07g0564750
    guanine nucleotide-exchange protein-like
    putative guanine nucleotide-exchange protein GEP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22864198..22875218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791397.3 → XP_015646883.1  brefeldin A-inhibited guanine nucleotide-exchange protein 5

      UniProtKB/TrEMBL
      A2XXG5
      Conserved Domains (6) summary
      PLN03076
      Location:11 → 1717
      PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
      pfam01369
      Location:559 → 740
      Sec7; Sec7 domain
      pfam09324
      Location:1052 → 1135
      DUF1981; Domain of unknown function (DUF1981)
      pfam12783
      Location:310 → 457
      Sec7_N; Guanine nucleotide exchange factor in Golgi transport N-terminal
      pfam16206
      Location:1200 → 1300
      Mon2_C; C-terminal region of Mon2 protein
      pfam16213
      Location:79 → 210
      DCB; Dimerization and cyclophilin-binding domain of Mon2
    Nucleotide Protein
    Heading Accession and Version

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