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    LOC4334068 protein transport protein SEC23 G [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334068, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334068
    Gene description
    protein transport protein SEC23 G
    Locus tag
    OSNPB_030742800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 41.4), flower buds (RPKM 35.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334068 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31359146..31364375)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30476499..30482067)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene magnesium transporter MRS2-I-like Neighboring gene uncharacterized LOC136355856 Neighboring gene auxin-responsive protein IAA13-like Neighboring gene pentatricopeptide repeat-containing protein At3g04750, mitochondrial Neighboring gene uncharacterized LOC136355593

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein SEC23 G
    Names
    Os03g0742800
    protein transport protein sec23-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31359146..31364375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775957.3 → XP_015631443.1  protein transport protein SEC23 G isoform X1

      UniProtKB/TrEMBL
      B8AJU0
      Conserved Domains (6) summary
      cd11287
      Location:607 → 727
      Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
      PLN00162
      Location:1 → 757
      PLN00162; transport protein sec23; Provisional
      pfam04810
      Location:69 → 97
      zf-Sec23_Sec24; Sec23/Sec24 zinc finger
      pfam04815
      Location:528 → 609
      Sec23_helical; Sec23/Sec24 helical domain
      pfam08033
      Location:403 → 503
      Sec23_BS; Sec23/Sec24 beta-sandwich domain
      cl00057
      Location:131 → 384
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_066309070.1 → XP_066165167.1  protein transport protein SEC23 G isoform X1

    3. XM_026023885.2 → XP_025879670.1  protein transport protein SEC23 G isoform X2

      UniProtKB/TrEMBL
      A0A0P0W2T3, B8AJU0, Q75KX1
      Conserved Domains (1) summary
      PLN00162
      Location:1 → 757
      PLN00162; transport protein sec23; Provisional
    Nucleotide Protein
    Heading Accession and Version

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