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    LOC4348643 perakine reductase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348643, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4348643
    Gene description
    perakine reductase
    Locus tag
    OSNPB_100419100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 11.9), roots after flowering (RPKM 10.5) and 5 other tissues See more
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    Genomic context

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    See LOC4348643 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15393193..15398273)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14731518..14736613)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene calcium-transporting ATPase 7, plasma membrane-type-like Neighboring gene uncharacterized LOC136353630 Neighboring gene uncharacterized LOC136353807 Neighboring gene uncharacterized LOC112936697 Neighboring gene protein indeterminate-domain 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aldo-keto reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    perakine reductase
    Names
    Os10g0419100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403971.1 → NP_001390900.1  perakine reductase

      Status: VALIDATED

      Source sequence(s)
      AK064344, AP014966, CF296514
      UniProtKB/TrEMBL
      B8BGV3, B9G5S1, Q338B1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      15393193..15398273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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