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    LOC4350197 tubulin alpha-2 chain-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350197, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350197
    Gene description
    tubulin alpha-2 chain-like
    Locus tag
    OSNPB_110247300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TID1; TubA
    Expression
    Broad expression in flowers (RPKM 1644.0), flower buds (RPKM 1106.0) and 5 other tissues See more
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    Genomic context

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    See LOC4350197 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8393437..8396297)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7960499..7963293)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene uncharacterized LOC4350195 Neighboring gene uncharacterized LOC4350198 Neighboring gene uncharacterized LOC4350199

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A dominant mutation of TWISTED DWARF 1 encoding an alpha-tubulin protein causes severe dwarfism and right helical growth in rice. Sunohara H, et al. Genes Genet Syst, 2009 Jun. PMID 19745569
    2. Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development. Qin X, et al. Biochim Biophys Acta, 1997 Oct 9. PMID 9375785
    3. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin alpha-2 chain
    Names
    LOC_Os11g14220
    alfa-tubulin
    alpha-tublin
    alpha-tubulin
    NP_001391388.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404459.1 → NP_001391388.1  tubulin alpha-2 chain

      Status: VALIDATED

      Source sequence(s)
      AK288787, AU183246, BP184710, CF276489, CI381567
      UniProtKB/Swiss-Prot
      Q43606, Q53M52
      UniProtKB/TrEMBL
      A2ZD27, A3CA68, Q0ITK1, Q0PVB1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8393437..8396297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q53M52.1 GenPept UniProtKB/Swiss-Prot:Q53M52

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