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    LOC4325511 peroxiredoxin-2C-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325511, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325511
    Gene description
    peroxiredoxin-2C-like
    Locus tag
    OSNPB_010675100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PRXIIC; OsJ_002891; OJ1117_G01.9
    Expression
    Ubiquitous expression in flower buds (RPKM 333.9), roots before flowering (RPKM 291.2) and 6 other tissues See more
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    Genomic context

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    See LOC4325511 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28333069..28335198, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27745808..27747926, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein MALE DISCOVERER 2 Neighboring gene rop guanine nucleotide exchange factor 9 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene probable glucuronosyltransferase Os01g0675500

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables thioredoxin peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell redox homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxiredoxin-2C
    Names
    LOC_Os01g48420
    P0485G01.43
    Peroxiredoxin IIC
    Thioredoxin reductase 2C
    glutaredoxin-dependent peroxiredoxin
    putative thioredoxin peroxidase
    thioredoxin peroxidase 2C
    NP_001384652.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397723.1 → NP_001384652.1  peroxiredoxin-2C

      Status: VALIDATED

      Source sequence(s)
      AK058509, CI649605, CV725451
      UniProtKB/Swiss-Prot
      B7E2W9, Q7F529, Q9FR35
      UniProtKB/TrEMBL
      A2WTQ2
      Conserved Domains (1) summary
      cd03013
      Location:6 → 160
      PRX5_like; Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 ...

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28333069..28335198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FR35.1 GenPept UniProtKB/Swiss-Prot:Q9FR35

    Gene LinkOut

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