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    LOC4333265 probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333265, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333265
    Gene description
    probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3
    Locus tag
    OSNPB_030565100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OST3
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 36.2), flower buds (RPKM 30.8) and 6 other tissues See more
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    Genomic context

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    See LOC4333265 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21220890..21227401, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (20363577..20370046, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333263 Neighboring gene antimicrobial ginkbilobin-2-like protein Neighboring gene CBBY-like protein Neighboring gene uncharacterized LOC4333267

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation via asparagine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of oligosaccharyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3
    Names
    LOC_Os03g36730
    OSJNBa0084C09.17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402181.1 → NP_001389110.1  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 precursor

      Status: VALIDATED

      Source sequence(s)
      AK061364, CI110252, CI287532, CI616037
      UniProtKB/Swiss-Prot
      A0A0P0VZB7, Q94I55
      UniProtKB/TrEMBL
      B8AKU1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      21220890..21227401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94I55.1 GenPept UniProtKB/Swiss-Prot:Q94I55

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