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    LOC4330805 MADS-box transcription factor 22-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330805, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330805
    Gene description
    MADS-box transcription factor 22-like
    Locus tag
    OSNPB_020761000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RMD1; MADS22; OsMADS22; OsJ_08471; OJ1175_B01.24
    Expression
    Broad expression in leaves after flowering (RPKM 80.6), roots after flowering (RPKM 75.8) and 6 other tissues See more
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    Genomic context

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    See LOC4330805 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32534232..32540178)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32038878..32044846)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330801 Neighboring gene universal stress protein PHOS34 Neighboring gene BTB/POZ and MATH domain-containing protein 2 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP40 Neighboring gene uncharacterized LOC4330807

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy. Sentoku N, et al. Mol Genet Genomics, 2005 Mar. PMID 15682279
    2. Isolation and characterization of rice MADS box gene homologues and their RFLP mapping. Shinozuka Y, et al. DNA Res, 1999 Apr 30. PMID 10382970
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mADS-box transcription factor 22
    Names
    LOC_Os02g52340
    MADS box-like protein
    MADS domain protein
    MADS-box transcription factor 22
    putative MADS box transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401987.1 → NP_001388916.1  mADS-box transcription factor 22

      Status: VALIDATED

      Source sequence(s)
      AU174746, CB652556, CI643268
      UniProtKB/Swiss-Prot
      D3U2H0, Q0DXD1, Q9XJ66

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32534232..32540178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XJ66.1 GenPept UniProtKB/Swiss-Prot:Q9XJ66

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