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    LOC4329809 ras-related protein Rab-2-B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329809, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329809
    Gene description
    ras-related protein Rab-2-B
    Locus tag
    OSNPB_020586400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 81.6), flowers (RPKM 60.5) and 6 other tissues See more
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    Genomic context

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    See LOC4329809 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23081350..23084012)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22599380..22602114)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280009 Neighboring gene uncharacterized LOC4329808 Neighboring gene small nuclear ribonucleoprotein SmD1a Neighboring gene uncharacterized LOC136355268

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsGAP1 functions as a positive regulator of OsRab11-mediated TGN to PM or vacuole trafficking. Heo JB, et al. Plant Cell Physiol, 2005 Dec. PMID 16230331
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-related protein Rab-2-B
    Names
    OSJNBb0056I22.32
    Os02g0586400
    putative GTP-binding protein yptm3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23081350..23084012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770798.3 → XP_015626284.1  ras-related protein Rab-2-B

      UniProtKB/TrEMBL
      A2X6K4, A3A8G5, Q43596, Q6YY17
      Conserved Domains (1) summary
      PLN03108
      Location:1 → 192
      PLN03108; Rab family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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