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    LOC4348712 17.7 kDa class II heat shock protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348712, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4348712
    Gene description
    17.7 kDa class II heat shock protein
    Locus tag
    OSNPB_100437700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 11.5) and mature seeds (RPKM 1.1) See more
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    Genomic context

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    See LOC4348712 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (15681186..15683594)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene universal stress protein YxiE Neighboring gene soluble starch synthase 2-1, chloroplastic/amyloplastic-like Neighboring gene 23.2 kDa heat shock protein-like Neighboring gene FH protein interacting protein FIP2 Neighboring gene SKP1-like protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    17.7 kDa class II heat shock protein
    Names
    Os10g0437700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      15681186..15683594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759076.1 → XP_015614562.1  17.7 kDa class II heat shock protein

      UniProtKB/TrEMBL
      A0A8J8XYX8, B8BH26, B9G5W8, Q0IXH2, Q109M7
      Conserved Domains (1) summary
      cd06464
      Location:26 → 99
      ACD_sHsps-like; Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally ...
    Nucleotide Protein
    Heading Accession and Version

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