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    LOC4347960 acyl transferase 15-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347960, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4347960
    Gene description
    acyl transferase 15-like
    Locus tag
    OSNPB_100108700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AT15; OsAT15; OsJ_30490
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    Genomic context

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    See LOC4347960 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (588445..590098)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (583024..584656)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353728 Neighboring gene uncharacterized LOC9269858 Neighboring gene small nucleolar RNA Z247 Neighboring gene acyl transferase 15 Neighboring gene uncharacterized LOC136353689

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    acyl transferase 15
    Names
    Acyl transferase 15
    LOC_Os10g01920
    OSJNBa0015O22.8
    Os10g0108700
    NP_001409895.1
    XP_025876476.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422966.1 → NP_001409895.1  acyl transferase 15

      Status: VALIDATED

      Source sequence(s)
      AK060060, CI429028
      UniProtKB/Swiss-Prot
      Q7XHC4, Q8S7Z5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      588445..590098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020691.2 → XP_025876476.1  acyl transferase 15 isoform X1

      UniProtKB/Swiss-Prot
      Q7XHC4, Q8S7Z5
      UniProtKB/TrEMBL
      A2Z4E7
      Conserved Domains (1) summary
      pfam02458
      Location:12 → 376
      Transferase; Transferase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XHC4.1 GenPept UniProtKB/Swiss-Prot:Q7XHC4

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