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    LOC4348656 homocysteine S-methyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348656, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348656
    Gene description
    homocysteine S-methyltransferase 2
    Locus tag
    OSNPB_100422200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 3.1), flowers (RPKM 2.4) and 3 other tissues See more
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    Genomic context

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    See LOC4348656 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15585256..15588280)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14921930..14925036)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g31850, chloroplastic Neighboring gene protein NETWORKED 1D Neighboring gene uncharacterized LOC4348657 Neighboring gene uncharacterized LOC136353473

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-homocysteine S-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in S-methylmethionine cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in methionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homocysteine S-methyltransferase 2
    Names
    Os10g0422200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      15585256..15588280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757927.3 → XP_015613413.1  homocysteine S-methyltransferase 2

      UniProtKB/TrEMBL
      A2Z7F0, A3C4V2, Q7XEH2
      Conserved Domains (1) summary
      PLN02489
      Location:1 → 334
      PLN02489; homocysteine S-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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