U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4339397 respiratory burst oxidase homolog protein A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339397, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339397
    Gene description
    respiratory burst oxidase homolog protein A
    Locus tag
    OSNPB_050528000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339397 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26355424..26363824, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26237492..26246103, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin 5,3-O-glucosyltransferase Neighboring gene UDP-glycosyltransferase 88A1 Neighboring gene uncharacterized LOC4339398 Neighboring gene probable WRKY transcription factor 24

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    respiratory burst oxidase homolog protein A
    Names
    Os05g0528000

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26355424..26363824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784334.3 → XP_015639820.1  respiratory burst oxidase homolog protein A

      UniProtKB/TrEMBL
      A0A0P0WPQ4, A2Y6R3, Q0DGJ4, Q65XC8
      Conserved Domains (6) summary
      cd00051
      Location:249 → 296
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam08022
      Location:625 → 741
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:747 → 933
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam01794
      Location:436 → 583
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:171 → 269
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:268 → 339
      EF-hand_7; EF-hand domain pair

    2. XM_015784333.3 → XP_015639819.1  respiratory burst oxidase homolog protein A

      UniProtKB/TrEMBL
      A0A0P0WPQ4, A2Y6R3, Q0DGJ4, Q65XC8
      Conserved Domains (6) summary
      cd00051
      Location:249 → 296
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam08022
      Location:625 → 741
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:747 → 933
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam01794
      Location:436 → 583
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:171 → 269
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:268 → 339
      EF-hand_7; EF-hand domain pair

    RNA

    1. XR_001546114.3 RNA Sequence

    2. XR_001546113.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials