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    LOC4336935 serine/threonine-protein kinase STY13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336935, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336935
    Gene description
    serine/threonine-protein kinase STY13
    Locus tag
    OSNPB_040608900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DPK2
    Expression
    Broad expression in roots before flowering (RPKM 76.2), flowers (RPKM 57.3) and 6 other tissues See more
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    Genomic context

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    See LOC4336935 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30825652..30829602, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene probable nucleoredoxin 3 Neighboring gene uncharacterized LOC107280509 Neighboring gene uncharacterized LOC4336934 Neighboring gene zinc finger CCCH domain-containing protein 13-like Neighboring gene organic cation/carnitine transporter 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase STY13
    Names
    Os04g0608900
    serine/threonine protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30825652..30829602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780626.2 → XP_015636112.1  serine/threonine-protein kinase STY13 isoform X1

      UniProtKB/TrEMBL
      A0A5S6RAR0, A2XXC2, Q0JAA5, Q25AI9, Q7XPE5, Q8GV29
      Conserved Domains (1) summary
      cd13999
      Location:148 → 395
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

    2. XM_026024677.1 → XP_025880462.1  serine/threonine-protein kinase STY13 isoform X2

      Conserved Domains (1) summary
      cl21453
      Location:148 → 310
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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