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    LOC4336066 14-3-3-like protein GF14-B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336066, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4336066
    Gene description
    14-3-3-like protein GF14-B
    Locus tag
    OSNPB_040462500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GF14B; B0812A04.1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 227.6), leaves after flowering (RPKM 119.6) and 6 other tissues See more
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    Genomic context

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    See LOC4336066 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23598409..23601961)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23103981..23107590)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336064 Neighboring gene lysine histidine transporter-like 6 Neighboring gene uncharacterized LOC4336067 Neighboring gene uncharacterized LOC136356118

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice. Wu J, et al. J Plant Physiol, 2022 Jan. PMID 34906796
    2. Rice G protein γ subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H(+) -ATPase. Wang K, et al. Plant J, 2021 Sep. PMID 34216063
    3. Functional diversification of FD transcription factors in rice, components of florigen activation complexes. Tsuji H, et al. Plant Cell Physiol, 2013 Mar. PMID 23324168, Free PMC Article
    4. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    5. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Rice G protein gamma subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H(+) -ATPase.
      Title: Rice G protein γ subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H(+) -ATPase.
    2. OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO2] in rice.
      Title: OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO(2)] in rice.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    14-3-3-like protein GF14-B
    Names
    B1358B12.12
    G-box binding factor
    G-box factor 14-3-3 homolog B
    GF14-b protein
    LOC_Os04g38870
    OSJNBa0072F16.20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402372.1 → NP_001389301.1  14-3-3-like protein GF14-B

      Status: VALIDATED

      Source sequence(s)
      CB673058, CI180087, U65956
      UniProtKB/Swiss-Prot
      O24221, Q7XTE8
      UniProtKB/TrEMBL
      A2XUA6, A3AUK3, Q0JCM0

    2. NM_001402373.1 → NP_001389302.1  14-3-3-like protein GF14-B

      Status: VALIDATED

      Source sequence(s)
      CF312656, CI180087, U65956
      UniProtKB/Swiss-Prot
      O24221, Q7XTE8
      UniProtKB/TrEMBL
      A2XUA6, A3AUK3, Q0JCM0

    3. NM_001402374.1 → NP_001389303.1  14-3-3-like protein GF14-B

      Status: VALIDATED

      Source sequence(s)
      CI180087, CI615492, U65956
      UniProtKB/Swiss-Prot
      O24221, Q7XTE8
      UniProtKB/TrEMBL
      A2XUA6, A3AUK3, Q0JCM0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23598409..23601961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780243.3 → XP_015635729.1  14-3-3-like protein GF14-B isoform X1

      UniProtKB/Swiss-Prot
      O24221, Q7XTE8
      UniProtKB/TrEMBL
      A2XUA6, A3AUK3, Q0JCM0
      Conserved Domains (1) summary
      smart00101
      Location:9 → 252
      14_3_3; 14-3-3 homologues
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XTE8.2 GenPept UniProtKB/Swiss-Prot:Q7XTE8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials