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    LOC4336969 pentatricopeptide repeat-containing protein At1g79490, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336969, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336969
    Gene description
    pentatricopeptide repeat-containing protein At1g79490, mitochondrial
    Locus tag
    OSNPB_040612800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336969 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31581324..31583863, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31073774..31076364, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 36.4 kDa proline-rich protein Neighboring gene coatomer subunit epsilon-1-like Neighboring gene cinnamyl alcohol dehydrogenase 7-like Neighboring gene uncharacterized LOC4336970 Neighboring gene zinc transporter 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g79490, mitochondrial
    Names
    Os04g0612800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31581324..31583863 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780123.3 → XP_015635609.1  pentatricopeptide repeat-containing protein At1g79490, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WEN6, Q7XLD5
      Conserved Domains (3) summary
      PLN03218
      Location:196 → 530
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:336 → 361
      PPR; PPR repeat [structural motif]
      cl02619
      Location:657 → 735
      Smr; Smr domain
    Nucleotide Protein
    Heading Accession and Version

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