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    LOC9270136 ruBisCO large subunit-binding protein subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270136, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270136
    Gene description
    ruBisCO large subunit-binding protein subunit alpha
    Locus tag
    OSNPB_030859600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 62.1), flower buds (RPKM 57.3) and 6 other tissues See more
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    Genomic context

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    See LOC9270136 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37260416..37263818, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36281401..36284940, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene la-related protein 1C Neighboring gene ABC transporter G family member 3 Neighboring gene uncharacterized LOC107276092 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 Neighboring gene probable glutathione S-transferase GSTU1 Neighboring gene uncharacterized LOC4334862

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ruBisCO large subunit-binding protein subunit alpha
    Names
    60 kDa chaperonin alpha subunit
    Os03g0859600
    Os03g0859700
    putative chaperonin 60 alpha subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37260416..37263818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775021.2 → XP_015630507.1  ruBisCO large subunit-binding protein subunit alpha

      UniProtKB/TrEMBL
      A2XPB4, A3APZ0, Q7X9A7
      Conserved Domains (1) summary
      cd03344
      Location:45 → 565
      GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
    Nucleotide Protein
    Heading Accession and Version

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