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    LOC4338743 Transcription termination factor MTERF4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338743, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338743
    Gene description
    Transcription termination factor MTERF4, chloroplastic
    Locus tag
    OSNPB_050404000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_18494
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    Genomic context

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    See LOC4338743 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19780283..19782180)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19678109..19680100)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTEF1, chloroplastic Neighboring gene uncharacterized LOC107281033 Neighboring gene peptide methionine sulfoxide reductase B3, chloroplastic-like Neighboring gene uncharacterized LOC4338745

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription termination factor MTERF4, chloroplastic
    Names
    LOC_Os05g33500
    Mitochondrial transcription termination factor 4
    OSJNBb0006J12.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420503.1 → NP_001407432.1  transcription termination factor MTERF4, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK102821, AP014961
      UniProtKB/Swiss-Prot
      Q6AUK6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19780283..19782180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AUK6.1 GenPept UniProtKB/Swiss-Prot:Q6AUK6

    Gene LinkOut

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