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    LOC4329009 NADPH:adrenodoxin oxidoreductase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329009, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329009
    Gene description
    NADPH:adrenodoxin oxidoreductase, mitochondrial
    Locus tag
    OSNPB_020277600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 6.3), roots before flowering (RPKM 4.9) and 6 other tissues See more
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    Genomic context

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    See LOC4329009 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10236253..10241871)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10207037..10212945)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable tocopherol cyclase, chloroplastic Neighboring gene transcription factor bHLH133 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene uncharacterized LOC136355397

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NADPH:adrenodoxin oxidoreductase, mitochondrial
    Names
    OSJNBa0055M07.15
    Os02g0277600
    putative NADPH:adrenodoxin oxidoreductase mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10236253..10241871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771422.3 → XP_015626908.1  NADPH:adrenodoxin oxidoreductase, mitochondrial

      UniProtKB/TrEMBL
      B8AFL4, B9F502, Q0E227, Q6ERP0
      Conserved Domains (1) summary
      PLN02852
      Location:1 → 499
      PLN02852; ferredoxin-NADP+ reductase
    Nucleotide Protein
    Heading Accession and Version

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