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    LOC4342435 uncharacterized LOC4342435 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342435, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342435
    Gene description
    uncharacterized LOC4342435
    Locus tag
    OSNPB_070157900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342435 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3171483..3177688)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3111596..3117959)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peroxidase 2 Neighboring gene peroxidase 10 Neighboring gene uncharacterized LOC4342434 Neighboring gene uncharacterized LOC4342437 Neighboring gene RNA-binding protein CP33, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-DNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342435
    Names
    Os07g0157900
    Os07g0158000
    putative deoxyribonuclease TATDN1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3171483..3177688
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791649.3 → XP_015647135.1  uncharacterized protein LOC4342435 isoform X3

      Conserved Domains (1) summary
      cd01310
      Location:8 → 229
      TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

    2. XM_015791648.3 → XP_015647134.1  uncharacterized protein LOC4342435 isoform X2

      Conserved Domains (1) summary
      cd01310
      Location:8 → 229
      TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

    3. XM_026026742.2 → XP_025882527.1  uncharacterized protein LOC4342435 isoform X1

      Conserved Domains (1) summary
      cd01310
      Location:8 → 236
      TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

    RNA

    1. XR_003243283.2 RNA Sequence

    2. XR_010742467.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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