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    LOC4338978 transcription factor ILR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338978, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4338978
    Gene description
    transcription factor ILR3
    Locus tag
    OSNPB_050455400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 157.2), leaves after flowering (RPKM 20.0) and 5 other tissues See more
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    Genomic context

    See LOC4338978 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22484597..22486953)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22371151..22373574)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338976 Neighboring gene BEL1-like homeodomain protein 9 Neighboring gene delta-1-pyrroline-5-carboxylate synthase 1-like Neighboring gene PRA1 family protein A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    transcription factor ILR3
    Names
    Os05g0455400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22484597..22486953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782051.3XP_015637537.1  transcription factor ILR3

      UniProtKB/TrEMBL
      A2Y5C1
      Conserved Domains (1) summary
      cd11446
      Location:76151
      bHLH_AtILR3_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein IAA-leucine resistant 3 (ILR3) and similar proteins