LOC4341805 probable potassium transporter 13 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341805
Gene description: probable potassium transporter 13
Locus tag: OSNPB_060671000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: HAK13; OsHAK13
Expression: Broad expression in leaves after flowering (RPKM 28.7), roots after flowering (RPKM 17.8) and 5 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	6	NC_089040.1 (28685541..28693088)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (27819969..27827515)

Chromosome 6 - NC_089040.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables potassium ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in potassium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable potassium transporter 13

Names: LOC_Os06g45940; OSJNBa0032M14.1; P0485A07.11; putative potasium transporter; putative potassium transporter KUP3p

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001421700.1 → NP_001408629.1 probable potassium transporter 13

Status: VALIDATED

Source sequence(s)

AK111663, AP014962, CI313001, CI575466, CI583208, CI592063

UniProtKB/Swiss-Prot

A0A0P0WZY4, Q0DA79, Q652J4, Q8VXB0

UniProtKB/TrEMBL

B8B174

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089040.1 Reference ASM3414082v1 Primary Assembly

Range

28685541..28693088

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026026558.2 → XP_025882343.1 probable potassium transporter 13 isoform X1

UniProtKB/Swiss-Prot

A0A0P0WZY4, Q0DA79, Q652J4, Q8VXB0

UniProtKB/TrEMBL

B8B174

Conserved Domains (1) summary

cl15781
Location:1 → 665

K_trans; K+ potassium transporter