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    LOC4343409 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343409, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343409
    Gene description
    disease resistance protein RGA2
    Locus tag
    OSNPB_070521600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1372_D12.104; OJ1657_A07.115
    Expression
    Ubiquitous expression in roots after flowering (RPKM 4.3), leaves after flowering (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343409 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20391058..20397370, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20163919..20170232, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343406 Neighboring gene uncharacterized LOC112939694 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene uncharacterized LOC107281679

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA2
    Names
    Os07g0521600
    putative resistance complex protein I2C-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20391058..20397370 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792158.3 → XP_015647644.1  disease resistance protein RGA2

      UniProtKB/TrEMBL
      A0A0U2RG80, A3BKF8, Q84ZR6
      Conserved Domains (5) summary
      COG4886
      Location:732 → 851
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:733 → 755
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:1081 → 1102
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1033 → 1046
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00931
      Location:233 → 512
      NB-ARC; NB-ARC domain

    RNA

    1. XR_001547794.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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