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    LOC4325021 peptidyl serine alpha-galactosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325021, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325021
    Gene description
    peptidyl serine alpha-galactosyltransferase
    Locus tag
    OSNPB_010904500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 7.8), flower buds (RPKM 5.4) and 6 other tissues See more
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    Genomic context

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    See LOC4325021 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40007956..40012575, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39374869..39379583, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354892 Neighboring gene uncharacterized LOC4325019 Neighboring gene structural maintenance of chromosomes protein 2-1 Neighboring gene two-component response regulator ORR26-like Neighboring gene uncharacterized LOC136355510

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl serine alpha-galactosyltransferase
    Names
    OSJNOa013M08.1
    Os01g0904500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40007956..40012575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783171.3 → XP_015638657.1  peptidyl serine alpha-galactosyltransferase

      UniProtKB/TrEMBL
      A0A0P0VBN6, A0A979HJ30, A2WY27, B9EVF7, Q0JGU0, Q5N6W0
    Nucleotide Protein
    Heading Accession and Version

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