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    LOC4343877 uncharacterized LOC4343877 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343877, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343877
    Gene description
    uncharacterized LOC4343877
    Locus tag
    OSNPB_070612400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_H02.121
    Expression
    Biased expression in mature seeds (RPKM 1.3), flower buds (RPKM 0.6) and 3 other tissues See more
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    Genomic context

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    See LOC4343877 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25439573..25441811, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25214495..25216718, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343875 Neighboring gene uncharacterized LOC4343876 Neighboring gene uncharacterized LOC107278313 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343877
    Names
    Os07g0612400
    carboxylesterase YbfK
    hydrolase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25439573..25441811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790094.3 → XP_015645580.1  uncharacterized protein LOC4343877

      UniProtKB/TrEMBL
      A0A0N7KNU8, A2YNM3, Q0D4Q8
      Conserved Domains (1) summary
      COG0596
      Location:51 → 304
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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