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    LOC4329540 60S acidic ribosomal protein P2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329540, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4329540
    Gene description
    60S acidic ribosomal protein P2A
    Locus tag
    OSNPB_020529700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 46.2), flower buds (RPKM 36.3) and 5 other tissues See more
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    Genomic context

    See LOC4329540 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19933021..19936249, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19455152..19458401, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene SNAP25 homologous protein SNAP33 Neighboring gene probable glycosyltransferase 2 Neighboring gene ent-isokaurene C2/C3-hydroxylase-like Neighboring gene pentatricopeptide repeat-containing protein At4g13650

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translational elongation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    60S acidic ribosomal protein P2A
    Names
    Os02g0529700
    P0476H10.25
    putative 60S acidic ribosomal protein P2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416636.1NP_001403565.1  60S acidic ribosomal protein P2A

      Status: VALIDATED

      Source sequence(s)
      CI552777, CI590977, CI657161
      UniProtKB/TrEMBL
      A2X5K7, A3A7K4, Q6H764

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19933021..19936249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307013.1XP_066163110.1  60S acidic ribosomal protein P2A isoform X1