U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4346966 lysine-specific demethylase JMJ26 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346966, updated on 1-Aug-2024

    Summary

    Gene symbol
    LOC4346966
    Gene description
    lysine-specific demethylase JMJ26
    Locus tag
    OSNPB_090393200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 9.8), leaves before flowering (RPKM 7.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (17951122..17968472)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13593448..13599806)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351900 Neighboring gene F-box/kelch-repeat protein At1g57790 Neighboring gene uncharacterized LOC136351710 Neighboring gene uncharacterized LOC112936455

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    lysine-specific demethylase JMJ26; lysine-specific demethylase JMJ29
    Names
    B1175F05.34
    DNA-binding protein PD3, chloroplast-like
    Os09g0393200
    lysine-specific demethylase JMJ25

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      17951122..17968472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304172.1XP_066160269.1  lysine-specific demethylase JMJ26 isoform X2

      UniProtKB/TrEMBL
      A2Z0Y6
    2. XM_066304173.1XP_066160270.1  lysine-specific demethylase JMJ29 isoform X3

      UniProtKB/TrEMBL
      A2Z0Y6
    3. XM_066304175.1XP_066160272.1  lysine-specific demethylase JMJ29 isoform X5

      UniProtKB/TrEMBL
      A2Z0Y6
    4. XM_066304174.1XP_066160271.1  lysine-specific demethylase JMJ29 isoform X4

      UniProtKB/TrEMBL
      A2Z0Y6
    5. XM_015756863.3XP_015612349.2  lysine-specific demethylase JMJ29 isoform X1

    RNA

    1. XR_010735035.1 RNA Sequence

    2. XR_010735034.1 RNA Sequence

    3. XR_010735036.1 RNA Sequence