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    LOC4328008 uncharacterized LOC4328008 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328008, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328008
    Gene description
    uncharacterized LOC4328008
    Locus tag
    OSNPB_020105000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1359_D06.1-1; OJ1212_C06.20-1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 10.8), flower buds (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    See LOC4328008 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (280978..283777)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (274413..277288)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative nitric oxide synthase Neighboring gene RGS1-HXK1-interacting protein 1 Neighboring gene protein transport protein SEC16A homolog Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328008
    Names
    OJA1212_C06.21-1
    Os02g0105000
    RNA-binding protein 48
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      280978..283777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767796.3 → XP_015623282.1  uncharacterized protein LOC4328008 isoform X1

      UniProtKB/TrEMBL
      B8AGW5, Q0E4Q8, Q6ETE3, Q6YPG3
      Conserved Domains (1) summary
      cd12442
      Location:9 → 107
      RRM_RBM48; RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins

    2. XM_015767797.3 → XP_015623283.1  uncharacterized protein LOC4328008 isoform X2

      UniProtKB/TrEMBL
      B8AGW5
      Conserved Domains (1) summary
      cd12442
      Location:9 → 107
      RRM_RBM48; RNA recognition motif in RNA-binding protein 48 (RBM48) and similar proteins

    RNA

    1. XR_010739652.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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