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    LOC4342420 peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342420, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342420
    Gene description
    peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like
    Locus tag
    OSNPB_070152900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLO5; GOX 3; OsGLO5; OsJ_23125
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    Genomic context

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    See LOC4342420 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2812118..2815687)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2797691..2801348)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase parC Neighboring gene peroxisomal membrane protein 13 Neighboring gene protein TIFY 5 Neighboring gene autonomous transposable element EN-1 mosaic protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice. Lu Y, et al. Physiol Plant, 2014 Mar. PMID 24102419
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (S)-2-hydroxy-acid oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycolate oxidase 5
    Names
    B1364A02.33-1
    B1364A02.33-2
    GOX 5
    Glycolate oxidase 5
    LOC_Os07g05820
    OSJNBb0050B07.1-1
    OSJNBb0050B07.1-2
    Short chain alpha-hydroxy acid oxidase GLO5
    peroxisomal (S)-2-hydroxy-acid oxidase GLO5
    putative (S)-2-hydroxy-acid oxidase
    putative glycolate oxidase
    NP_001389947.1
    XP_015646860.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403018.1 → NP_001389947.1  glycolate oxidase 5

      Status: VALIDATED

      Source sequence(s)
      CB646042, CB664710, CI219590
      UniProtKB/Swiss-Prot
      A0A0P0X2P6, B8B7C5, B9FVJ4, Q6YT73

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      2812118..2815687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791374.2 → XP_015646860.1  glycolate oxidase 5 isoform X1

      Conserved Domains (2) summary
      PLN02979
      Location:6 → 336
      PLN02979; glycolate oxidase
      cd02809
      Location:22 → 328
      alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YT73.1 GenPept UniProtKB/Swiss-Prot:Q6YT73

    Gene LinkOut

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