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    LOC4333623 cytochrome P450 87A3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333623, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333623
    Gene description
    cytochrome P450 87A3-like
    Locus tag
    OSNPB_030658800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333623 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26613022..26627799, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25746102..25760789, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor 28 Neighboring gene uncharacterized LOC136355579 Neighboring gene ferredoxin C 1, chloroplastic Neighboring gene glyoxylase I 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brassinosteroid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 87A3-like
    Names
    Os03g0658800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      26613022..26627799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024329.2 → XP_025880114.1  cytochrome P450 87A3-like isoform X2

      UniProtKB/TrEMBL
      A2XK92, A3AL14, Q850S5
      Conserved Domains (1) summary
      cl12078
      Location:44 → 501
      p450; Cytochrome P450

    2. XM_015774414.3 → XP_015629900.1  cytochrome P450 87A3-like isoform X1

      UniProtKB/TrEMBL
      A2XK92, A3AL14, Q0DPV8, Q10FR4, Q850S5
      Conserved Domains (1) summary
      cl12078
      Location:44 → 495
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

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