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    LOC4348519 red chlorophyll catabolite reductase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348519, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4348519
    Gene description
    red chlorophyll catabolite reductase
    Locus tag
    OSNPB_100389200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RCCR1; OsRCCR1
    Expression
    Broad expression in leaves before flowering (RPKM 34.1), leaves after flowering (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4348519 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13537802..13539773, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (12886330..12888549, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276735 Neighboring gene small nucleolar RNA Z188 Neighboring gene small nucleolar RNA Z188 Neighboring gene red chlorophyll catabolite reductase Neighboring gene cold-regulated protein 27

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice. Tang Y, et al. J Plant Physiol, 2011 Nov 1. PMID 21807436

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables red chlorophyll catabolite reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    red chlorophyll catabolite reductase 1, chloroplastic
    Names
    LOC_Os10g25030
    OSJNBa0094J09.24
    OSJNBb0061I18.22
    Os10g0389200
    RCC reductase
    Red chlorophyll catabolite reductase 1, chloroplastic
    red chlorophyll catabolite reductase 1
    NP_001409976.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423047.1 → NP_001409976.1  red chlorophyll catabolite reductase 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      JN604886
      UniProtKB/Swiss-Prot
      Q0IXZ5, Q338P6, Q94HB3, Q9AYE6
      UniProtKB/TrEMBL
      B8BGL6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      13537802..13539773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q338P6.1 GenPept UniProtKB/Swiss-Prot:Q338P6

    Gene LinkOut

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