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    LOC4341225 cationic amino acid transporter 8, vacuolar [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341225, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341225
    Gene description
    cationic amino acid transporter 8, vacuolar
    Locus tag
    OSNPB_060539400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 1.5), flowers (RPKM 1.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21107968..21110480)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20251403..20253908)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341223 Neighboring gene uncharacterized LOC136357134 Neighboring gene non-specific lipid-transfer protein 4.1 Neighboring gene uncharacterized LOC9271037

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic amino acid transporter 8, vacuolar
    Names
    B1018E06.14
    Os06g0539400
    P0551A03.56
    putative cationic amino acid transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21107968..21110480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025942.2 → XP_025881727.1  cationic amino acid transporter 8, vacuolar

      UniProtKB/TrEMBL
      A0A0P0WXV5, A2YDU1, Q5Z6S8, Q5Z711
      Conserved Domains (1) summary
      TIGR00906
      Location:63 → 568
      2A0303; cationic amino acid transport permease
    Nucleotide Protein
    Heading Accession and Version

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