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    LOC4352652 BTB/POZ domain-containing protein NPY4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352652, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4352652
    Gene description
    BTB/POZ domain-containing protein NPY4
    Locus tag
    OSNPB_120583500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 18.9), roots after flowering (RPKM 17.5) and 5 other tissues See more
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    Genomic context

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    See LOC4352652 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24929718..24936172, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24218359..24224985, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase nepenthesin-1-like Neighboring gene uncharacterized LOC4352651 Neighboring gene zinc finger protein 1 Neighboring gene nucleobase-ascorbate transporter 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein NPY4
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain BTBN24
    Os12g0583500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24929718..24936172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764610.3 → XP_015620096.1  BTB/POZ domain-containing protein NPY4

      UniProtKB/TrEMBL
      A2ZM45, Q0IM99, Q2QN08
      Conserved Domains (2) summary
      cd18312
      Location:21 → 124
      BTB_POZ_NPY3-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins
      pfam03000
      Location:211 → 471
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version

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