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    LOC4337352 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337352, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337352
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
    Locus tag
    OSNPB_040670400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337352 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34720902..34725565, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34201019..34205705, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B11 Neighboring gene uncharacterized protein At4g06744 Neighboring gene oryzain beta chain-like Neighboring gene cysteine protease 1-like Neighboring gene probable phytol kinase 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
    Names
    OTU domain-containing protein 3
    Os04g0670400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34720902..34725565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310074.1 → XP_066166171.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X3

    2. XM_066310078.1 → XP_066166175.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X10

    3. XM_015777942.3 → XP_015633428.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:2 → 104
      OTU; OTU-like cysteine protease

    4. XM_015777943.3 → XP_015633429.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:2 → 104
      OTU; OTU-like cysteine protease

    5. XM_066310080.1 → XP_066166177.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X12

    6. XM_066310079.1 → XP_066166176.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X11

    7. XM_015777944.3 → XP_015633430.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X9

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:1 → 92
      OTU; OTU-like cysteine protease

    8. XM_066310075.1 → XP_066166172.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X5

    9. XM_015777938.3 → XP_015633424.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X2

      UniProtKB/TrEMBL
      Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    10. XM_015777939.3 → XP_015633425.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X4

      UniProtKB/TrEMBL
      B8ARH9, B9FD82, Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    11. XM_015777937.3 → XP_015633423.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X1

      UniProtKB/TrEMBL
      Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    12. XM_066310076.1 → XP_066166173.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X7

    13. XM_015777941.3 → XP_015633427.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X6

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:9 → 114
      OTU; OTU-like cysteine protease

    RNA

    1. XR_010741061.1 RNA Sequence

    2. XR_010741062.1 RNA Sequence

    3. XR_010741058.1 RNA Sequence

    4. XR_010741059.1 RNA Sequence

    5. XR_010741055.1 RNA Sequence

    6. XR_010741056.1 RNA Sequence

    7. XR_001544896.3 RNA Sequence

    8. XR_010741060.1 RNA Sequence

    9. XR_010741057.1 RNA Sequence

    10. XR_001544898.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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