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    LOC4345269 uncharacterized LOC4345269 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345269, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345269
    Gene description
    uncharacterized LOC4345269
    Locus tag
    OSNPB_080323000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 30.7), roots after flowering (RPKM 27.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345269 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14173297..14185329, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14105811..14117873, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial Neighboring gene uncharacterized LOC136351332 Neighboring gene uncharacterized LOC136351499

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endoplasmic reticulum signal peptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signal recognition particle binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of signal recognition particle, endoplasmic reticulum targeting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345269
    Names
    OSJNBa0078D03.1
    Os08g0323000
    Os08g0323266
    P0048E12.32
    putative signal recognition particle 68K protein
    signal recognition particle subunit SRP68

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14173297..14185329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795135.3 → XP_015650621.1  uncharacterized protein LOC4345269 isoform X2

      UniProtKB/TrEMBL
      B8B9Q7
      Conserved Domains (1) summary
      pfam16969
      Location:44 → 570
      SRP68; RNA-binding signal recognition particle 68

    2. XM_015795134.3 → XP_015650620.1  uncharacterized protein LOC4345269 isoform X1

      UniProtKB/TrEMBL
      B8B9Q7
      Conserved Domains (1) summary
      pfam16969
      Location:44 → 571
      SRP68; RNA-binding signal recognition particle 68
    Nucleotide Protein
    Heading Accession and Version

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