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    LOC4328249 protein PHOSPHATE STARVATION RESPONSE 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328249, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4328249
    Gene description
    protein PHOSPHATE STARVATION RESPONSE 3-like
    Locus tag
    OSNPB_020139000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PHR3; OsPHR3; OsJ_05314
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    Genomic context

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    See LOC4328249 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2083242..2086947, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2075624..2079332, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328246 Neighboring gene uncharacterized LOC136355168 Neighboring gene putative vacuolar cation/proton exchanger 4 Neighboring gene uncharacterized LOC4328250 Neighboring gene protein arginine N-methyltransferase 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PHOSPHATE STARVATION RESPONSE 3
    Names
    LOC_Os02g04640
    OSJNBa0026E05.31
    Os02g0139000
    Protein PHOSPHATE STARVATION RESPONSE 3
    protein PHR1-LIKE 1
    putative transfactor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409312.1 → NP_001396241.1  protein PHOSPHATE STARVATION RESPONSE 3

      Status: VALIDATED

      Source sequence(s)
      AK065704, AP014958, CB676291, CB676292, CF305055
      UniProtKB/Swiss-Prot
      Q6YXZ4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2083242..2086947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306979.1 → XP_066163076.1  protein PHOSPHATE STARVATION RESPONSE 3 isoform X1

      UniProtKB/Swiss-Prot
      Q6YXZ4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YXZ4.1 GenPept UniProtKB/Swiss-Prot:Q6YXZ4

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