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    LOC4343272 protein VASCULAR ASSOCIATED DEATH 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343272, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343272
    Gene description
    protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
    Locus tag
    OSNPB_070491600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1218_C12.20
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    Genomic context

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    See LOC4343272 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18542461..18549921)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18317374..18324664)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281688 Neighboring gene pentatricopeptide repeat-containing protein At1g03560, mitochondrial Neighboring gene cytochrome P450 716B1 Neighboring gene monooxygenase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of programmed cell death IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein VASCULAR ASSOCIATED DEATH 1, chloroplastic
    Names
    Os07g0491600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18542461..18549921
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792137.3 → XP_015647623.1  protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8B683
      Conserved Domains (2) summary
      cd13220
      Location:82 → 175
      PH-GRAM_GRAMDC; GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam16016
      Location:295 → 433
      DUF4782; Domain of unknown function (DUF4782)

    2. XM_015792138.3 → XP_015647624.1  protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8B683
      Conserved Domains (2) summary
      cd13220
      Location:82 → 175
      PH-GRAM_GRAMDC; GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam16016
      Location:286 → 434
      DUF4782; Domain of unknown function (DUF4782)
    Nucleotide Protein
    Heading Accession and Version

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