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    LOC4346352 histone-lysine N-methyltransferase family member SUVH9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346352, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346352
    Gene description
    histone-lysine N-methyltransferase family member SUVH9
    Locus tag
    OSNPB_080565450
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.4), flowers (RPKM 1.8) and 6 other tissues See more
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    Genomic context

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    See LOC4346352 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28490014..28492173, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28340958..28343241, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene dehydration-responsive element-binding protein 2C-like Neighboring gene uncharacterized LOC136351348 Neighboring gene monothiol glutaredoxin-S10-like Neighboring gene GDSL esterase/lipase At5g33370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase family member SUVH9
    Names
    OSJNBa0044E16.17
    Os08g0565450
    Os08g0565700
    P0705A05.133
    putative SET1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28490014..28492173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027330.2 → XP_025883115.1  histone-lysine N-methyltransferase family member SUVH9

      UniProtKB/TrEMBL
      A3BVV2, B8B9M4, Q84Z97
      Conserved Domains (3) summary
      cl40432
      Location:383 → 592
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
      pfam02182
      Location:151 → 303
      SAD_SRA; SAD/SRA domain
      cl02622
      Location:335 → 429
      Pre-SET; Pre-SET motif
    Nucleotide Protein
    Heading Accession and Version

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